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Ultrametric Cluster Hierarchies: IWant'em All!

Neural Information Processing Systems

Hierarchical clustering is a powerful tool for exploratory data analysis, organizing data into a tree of clusterings from which a partition can be chosen. This paper generalizes these ideas by proving that, for any reasonable hierarchy, one can optimally solve any center-based clustering objective over it (such as k-means). Moreover, these solutions can be found exceedingly quickly and are themselves necessarily hierarchical. Thus, given a cluster tree, we show that one can quickly access a plethora of new, equally meaningful hierarchies. Just as in standard hierarchical clustering, one can then choose any desired partition from these new hierarchies. We conclude by verifying the utility of our proposed techniques across datasets, hierarchies, and partitioning schemes.


Tree-Structured Orthonormal Decomposition of the Aitchison Simplex

arXiv.org Machine Learning

Compositional data -- vectors encoding relative proportions -- arise across scientific domains, including ecology, geochemistry, and genomics. The features in these data often come with known hierarchical structure (e.g., taxonomies, phylogenies, ontologies), yet existing methods either ignore this structure, discard the intrinsic Aitchison geometry, are designed for binary trees, or yield incomplete coordinate systems. We describe PolyILR, a canonical orthonormal decomposition of the Aitchison tangent space aligned with any tree topology. Our construction defines a weighted local geometry at each internal node capturing full branching structure, then lifts these to a global orthonormal basis where every coordinate corresponds to a specific tree location. On microbiome and single-cell benchmarks, PolyILR yields stable, interpretable features and enables inference at multiscale tree resolution. We also establish a novel theoretical connection to softmax classifiers, suggesting possible applications to probabilistic modeling.





SupplementaryMaterial: StronglyIncremental ConstituencyParsingwithGraphNeuralNetworks

Neural Information Processing Systems

Conversely,ifsuch xandy donot exist,wesayT doesnotcontainunarychains. Then we present Algorithm 1 for computing oracle actions. Given a constituency treeT without unary chains, it recursively finds and undoes the last action untilT becomes empty_tree. Let T be a constituency tree for a sentence of length n. And this sequence of actions can be computed via Algorithm1. When n > 0, it is sufficient to proveT0 is a valid constituency tree without unary chains for a sentence oflengthn 1. Weproceed byenumerating allpossible execution traces inlast_action.